WORC
v3.4.2
Introduction
Quick start guide
User Manual
Configuration
Radiomics Features
Additional functionality
FAQ
Developer documentation
Resource File Formats
Changelog
WORC Package
WORC
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B
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C
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D
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E
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F
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G
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H
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__abstractmethods__ (WORC.classification.SearchCV.BaseSearchCV attribute)
(WORC.classification.SearchCV.BaseSearchCVfastr attribute)
(WORC.classification.SearchCV.BaseSearchCVJoblib attribute)
(WORC.classification.SearchCV.Ensemble attribute)
(WORC.classification.SearchCV.GridSearchCVfastr attribute)
(WORC.classification.SearchCV.GridSearchCVJoblib attribute)
(WORC.classification.SearchCV.RandomizedSearchCVfastr attribute)
(WORC.classification.SearchCV.RandomizedSearchCVJoblib attribute)
(WORC.detectors.detectors.AbstractDetector attribute)
(WORC.detectors.detectors.BigrClusterDetector attribute)
(WORC.detectors.detectors.CartesiusClusterDetector attribute)
(WORC.detectors.detectors.CsvDetector attribute)
(WORC.detectors.detectors.DebugDetector attribute)
(WORC.detectors.detectors.HostnameDetector attribute)
(WORC.detectors.detectors.LinuxDetector attribute)
(WORC.detectors.detectors.WORCDirectoryDetector attribute)
(WORC.featureprocessing.ICCThreshold.ICCThreshold attribute)
(WORC.featureprocessing.Relief.SelectMulticlassRelief attribute)
(WORC.featureprocessing.SelectGroups.SelectGroups attribute)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals attribute)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold attribute)
(WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean attribute)
(WORC.validators.preflightcheck.AbstractValidator attribute)
(WORC.validators.preflightcheck.EvaluateValidator attribute)
(WORC.validators.preflightcheck.InvalidLabelsValidator attribute)
(WORC.validators.preflightcheck.MinSubjectsValidator attribute)
(WORC.validators.preflightcheck.SamplesWarning attribute)
(WORC.validators.preflightcheck.SimpleValidator attribute)
__dict__ (WORC.classification.AdvancedSampler.AdvancedSampler attribute)
(WORC.classification.AdvancedSampler.boolean_uniform attribute)
(WORC.classification.AdvancedSampler.discrete_uniform attribute)
(WORC.classification.AdvancedSampler.exp_uniform attribute)
(WORC.classification.AdvancedSampler.log_uniform attribute)
(WORC.classification.ObjectSampler.ObjectSampler attribute)
(WORC.detectors.detectors.AbstractDetector attribute)
(WORC.facade.helpers.configbuilder.ConfigBuilder attribute)
(WORC.facade.simpleworc.SimpleWORC attribute)
(WORC.featureprocessing.Imputer.Imputer attribute)
(WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper attribute)
(WORC.featureprocessing.Preprocessor.Preprocessor attribute)
(WORC.processing.classes.switch attribute)
(WORC.tools.Elastix.Elastix attribute)
(WORC.tools.Evaluate.Evaluate attribute)
(WORC.tools.Inference.Inference attribute)
(WORC.tools.Slicer.Slicer attribute)
(WORC.tools.Transformix.Transformix attribute)
(WORC.validators.preflightcheck.AbstractValidator attribute)
(WORC.validators.preflightcheck.ValidatorsFactory attribute)
(WORC.WORC.Tools attribute)
(WORC.WORC.WORC attribute)
__init__() (WORC.classification.AdvancedSampler.AdvancedSampler method)
(WORC.classification.AdvancedSampler.boolean_uniform method)
(WORC.classification.AdvancedSampler.discrete_uniform method)
(WORC.classification.AdvancedSampler.exp_uniform method)
(WORC.classification.AdvancedSampler.log_uniform method)
(WORC.classification.estimators.RankedSVM method)
(WORC.classification.ObjectSampler.ObjectSampler method)
(WORC.classification.SearchCV.BaseSearchCV method)
(WORC.classification.SearchCV.Ensemble method)
(WORC.classification.SearchCV.GridSearchCVfastr method)
(WORC.classification.SearchCV.GridSearchCVJoblib method)
(WORC.classification.SearchCV.RandomizedSearchCVfastr method)
(WORC.classification.SearchCV.RandomizedSearchCVJoblib method)
(WORC.detectors.detectors.CsvDetector method)
(WORC.detectors.detectors.HostnameDetector method)
(WORC.facade.basicworc.BasicWORC method)
(WORC.facade.helpers.configbuilder.ConfigBuilder method)
(WORC.facade.helpers.exceptions.InvalidCsvFileException method)
(WORC.facade.helpers.exceptions.InvalidOrderException method)
(WORC.facade.helpers.exceptions.NoFeaturesFoundException method)
(WORC.facade.helpers.exceptions.NoImagesFoundException method)
(WORC.facade.helpers.exceptions.NoSegmentationsFoundException method)
(WORC.facade.helpers.exceptions.PathNotFoundException method)
(WORC.facade.simpleworc.SimpleWORC method)
(WORC.featureprocessing.ICCThreshold.ICCThreshold method)
(WORC.featureprocessing.Imputer.Imputer method)
(WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper method)
(WORC.featureprocessing.Preprocessor.Preprocessor method)
(WORC.featureprocessing.Relief.SelectMulticlassRelief method)
(WORC.featureprocessing.Scalers.WORCScaler method)
(WORC.featureprocessing.SelectGroups.SelectGroups method)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals method)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method)
(WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean method)
(WORC.processing.classes.switch method)
(WORC.tools.Elastix.Elastix method)
(WORC.tools.Evaluate.Evaluate method)
(WORC.tools.Inference.Inference method)
(WORC.tools.Slicer.Slicer method)
(WORC.tools.Transformix.Transformix method)
(WORC.WORC.Tools method)
(WORC.WORC.WORC method)
__iter__() (WORC.classification.AdvancedSampler.AdvancedSampler method)
(WORC.processing.classes.switch method)
__len__() (WORC.classification.AdvancedSampler.AdvancedSampler method)
__module__ (WORC.addexceptions.WORCAssertionError attribute)
(WORC.addexceptions.WORCError attribute)
(WORC.addexceptions.WORCIndexError attribute)
(WORC.addexceptions.WORCIOError attribute)
(WORC.addexceptions.WORCKeyError attribute)
(WORC.addexceptions.WORCNotImplementedError attribute)
(WORC.addexceptions.WORCTypeError attribute)
(WORC.addexceptions.WORCValueError attribute)
(WORC.classification.AdvancedSampler.AdvancedSampler attribute)
(WORC.classification.AdvancedSampler.boolean_uniform attribute)
(WORC.classification.AdvancedSampler.discrete_uniform attribute)
(WORC.classification.AdvancedSampler.exp_uniform attribute)
(WORC.classification.AdvancedSampler.log_uniform attribute)
(WORC.classification.estimators.RankedSVM attribute)
(WORC.classification.ObjectSampler.ObjectSampler attribute)
(WORC.classification.SearchCV.BaseSearchCV attribute)
(WORC.classification.SearchCV.BaseSearchCVfastr attribute)
(WORC.classification.SearchCV.BaseSearchCVJoblib attribute)
(WORC.classification.SearchCV.Ensemble attribute)
(WORC.classification.SearchCV.GridSearchCVfastr attribute)
(WORC.classification.SearchCV.GridSearchCVJoblib attribute)
(WORC.classification.SearchCV.RandomizedSearchCVfastr attribute)
(WORC.classification.SearchCV.RandomizedSearchCVJoblib attribute)
(WORC.detectors.detectors.AbstractDetector attribute)
(WORC.detectors.detectors.BigrClusterDetector attribute)
(WORC.detectors.detectors.CartesiusClusterDetector attribute)
(WORC.detectors.detectors.CsvDetector attribute)
(WORC.detectors.detectors.DebugDetector attribute)
(WORC.detectors.detectors.HostnameDetector attribute)
(WORC.detectors.detectors.LinuxDetector attribute)
(WORC.detectors.detectors.WORCDirectoryDetector attribute)
(WORC.facade.basicworc.BasicWORC attribute)
(WORC.facade.helpers.configbuilder.ConfigBuilder attribute)
(WORC.facade.helpers.exceptions.InvalidCsvFileException attribute)
(WORC.facade.helpers.exceptions.InvalidOrderException attribute)
(WORC.facade.helpers.exceptions.NoFeaturesFoundException attribute)
(WORC.facade.helpers.exceptions.NoImagesFoundException attribute)
(WORC.facade.helpers.exceptions.NoSegmentationsFoundException attribute)
(WORC.facade.helpers.exceptions.PathNotFoundException attribute)
(WORC.facade.simpleworc.SimpleWORC attribute)
(WORC.featureprocessing.ICCThreshold.ICCThreshold attribute)
(WORC.featureprocessing.Imputer.Imputer attribute)
(WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper attribute)
(WORC.featureprocessing.Preprocessor.Preprocessor attribute)
(WORC.featureprocessing.Relief.SelectMulticlassRelief attribute)
(WORC.featureprocessing.Scalers.LogStandardScaler attribute)
(WORC.featureprocessing.Scalers.RobustStandardScaler attribute)
(WORC.featureprocessing.Scalers.WORCScaler attribute)
(WORC.featureprocessing.SelectGroups.SelectGroups attribute)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals attribute)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold attribute)
(WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean attribute)
(WORC.processing.classes.switch attribute)
(WORC.tools.Elastix.Elastix attribute)
(WORC.tools.Evaluate.Evaluate attribute)
(WORC.tools.Inference.Inference attribute)
(WORC.tools.Slicer.Slicer attribute)
(WORC.tools.Transformix.Transformix attribute)
(WORC.validators.preflightcheck.AbstractValidator attribute)
(WORC.validators.preflightcheck.EvaluateValidator attribute)
(WORC.validators.preflightcheck.InvalidLabelsValidator attribute)
(WORC.validators.preflightcheck.MinSubjectsValidator attribute)
(WORC.validators.preflightcheck.SamplesWarning attribute)
(WORC.validators.preflightcheck.SimpleValidator attribute)
(WORC.validators.preflightcheck.ValidatorsFactory attribute)
(WORC.WORC.Tools attribute)
(WORC.WORC.WORC attribute)
__weakref__ (WORC.addexceptions.WORCError attribute)
(WORC.addexceptions.WORCIOError attribute)
(WORC.classification.AdvancedSampler.AdvancedSampler attribute)
(WORC.classification.AdvancedSampler.boolean_uniform attribute)
(WORC.classification.AdvancedSampler.discrete_uniform attribute)
(WORC.classification.AdvancedSampler.exp_uniform attribute)
(WORC.classification.AdvancedSampler.log_uniform attribute)
(WORC.classification.ObjectSampler.ObjectSampler attribute)
(WORC.detectors.detectors.AbstractDetector attribute)
(WORC.facade.helpers.configbuilder.ConfigBuilder attribute)
(WORC.facade.helpers.exceptions.InvalidCsvFileException attribute)
(WORC.facade.helpers.exceptions.InvalidOrderException attribute)
(WORC.facade.helpers.exceptions.NoFeaturesFoundException attribute)
(WORC.facade.helpers.exceptions.NoImagesFoundException attribute)
(WORC.facade.helpers.exceptions.NoSegmentationsFoundException attribute)
(WORC.facade.helpers.exceptions.PathNotFoundException attribute)
(WORC.facade.simpleworc.SimpleWORC attribute)
(WORC.featureprocessing.Imputer.Imputer attribute)
(WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper attribute)
(WORC.featureprocessing.Preprocessor.Preprocessor attribute)
(WORC.processing.classes.switch attribute)
(WORC.tools.Elastix.Elastix attribute)
(WORC.tools.Evaluate.Evaluate attribute)
(WORC.tools.Inference.Inference attribute)
(WORC.tools.Slicer.Slicer attribute)
(WORC.tools.Transformix.Transformix attribute)
(WORC.validators.preflightcheck.AbstractValidator attribute)
(WORC.validators.preflightcheck.ValidatorsFactory attribute)
(WORC.WORC.Tools attribute)
(WORC.WORC.WORC attribute)
A
AbstractDetector (class in WORC.detectors.detectors)
AbstractValidator (class in WORC.validators.preflightcheck)
add_ComBat() (WORC.WORC.WORC method)
add_config_overrides() (WORC.facade.simpleworc.SimpleWORC method)
add_elastix() (WORC.WORC.WORC method)
add_elastix_sourcesandsinks() (WORC.WORC.WORC method)
add_evaluation() (WORC.facade.simpleworc.SimpleWORC method)
(WORC.WORC.WORC method)
add_feature_calculator() (WORC.WORC.WORC method)
add_parameters_to_grid() (in module WORC.classification.trainclassifier)
add_preprocessing() (WORC.WORC.WORC method)
add_segmentix() (WORC.WORC.WORC method)
add_tools() (WORC.WORC.WORC method)
addchangeorder() (WORC.tools.Elastix.Elastix method)
AdvancedSampler (class in WORC.classification.AdvancedSampler)
B
BaseSearchCV (class in WORC.classification.SearchCV)
BaseSearchCVfastr (class in WORC.classification.SearchCV)
BaseSearchCVJoblib (class in WORC.classification.SearchCV)
BasicWORC (class in WORC.facade.basicworc)
bbox_2D() (in module WORC.plotting.plot_images)
bias_correct_image() (in module WORC.processing.preprocessing)
BigrClusterDetector (class in WORC.detectors.detectors)
binary_classification() (WORC.facade.simpleworc.SimpleWORC method)
boolean_uniform (class in WORC.classification.AdvancedSampler)
build() (WORC.WORC.WORC method)
build_config() (WORC.facade.helpers.configbuilder.ConfigBuilder method)
build_training() (WORC.WORC.WORC method)
C
calc_pvalue() (in module WORC.statistics.delong)
CartesiusClusterDetector (class in WORC.detectors.detectors)
check_image_orientation() (in module WORC.processing.helpers)
check_multimetric_scoring() (in module WORC.classification.metrics)
check_scoring() (in module WORC.classification.metrics)
chunks() (in module WORC.classification.SearchCV)
chunksdict() (in module WORC.classification.SearchCV)
clip_image() (in module WORC.processing.preprocessing)
coarse_overrides() (WORC.facade.helpers.configbuilder.ConfigBuilder method)
ComBat() (in module WORC.featureprocessing.ComBat)
ComBatMatlab() (in module WORC.featureprocessing.ComBat)
ComBatPython() (in module WORC.featureprocessing.ComBat)
combine_multiple_estimators() (in module WORC.plotting.plot_estimator_performance)
compute_confidence() (in module WORC.plotting.compute_CI)
compute_confidence_bootstrap() (in module WORC.plotting.compute_CI)
compute_confidence_logit() (in module WORC.plotting.compute_CI)
compute_ground_truth_statistics() (in module WORC.statistics.delong)
compute_midrank() (in module WORC.statistics.delong)
compute_midrank_weight() (in module WORC.statistics.delong)
compute_statistics() (in module WORC.plotting.plot_estimator_performance)
ConfigBuilder (class in WORC.facade.helpers.configbuilder)
construct_classifier() (in module WORC.classification.construct_classifier)
construct_SVM() (in module WORC.classification.construct_classifier)
convert_config_pyradiomics() (in module WORC.IOparser.file_io)
convert_features_ICC_threshold() (in module WORC.featureprocessing.ICCThreshold)
convert_PREDICT() (in module WORC.featureprocessing.FeatureConverter)
convert_pyradiomics() (in module WORC.featureprocessing.FeatureConverter)
convert_pyradiomics_featurevector() (in module WORC.featureprocessing.FeatureConverter)
convert_radiomix_features() (in module WORC.facade.helpers.processing)
count_num_subjects() (WORC.facade.simpleworc.SimpleWORC method)
count_parameters() (in module WORC.plotting.plot_barchart)
create_bbox() (WORC.tools.Elastix.Elastix method)
create_ensemble() (WORC.classification.SearchCV.BaseSearchCV method)
create_links_Addon() (WORC.tools.Evaluate.Evaluate method)
create_links_Standalone() (WORC.tools.Evaluate.Evaluate method)
create_network() (in module WORC.resources.fastr_tests.CalcFeatures_test)
(in module WORC.resources.fastr_tests.elastix_test)
(in module WORC.resources.fastr_tests.segmentix_test)
(WORC.tools.Elastix.Elastix method)
(WORC.tools.Evaluate.Evaluate method)
(WORC.tools.Inference.Inference method)
(WORC.tools.Slicer.Slicer method)
(WORC.tools.Transformix.Transformix method)
create_param_grid() (in module WORC.classification.construct_classifier)
create_random_features() (in module WORC.exampledata.create_example_data)
createfixedsplits() (in module WORC.classification.createfixedsplits)
(in module WORC.tools.createfixedsplits)
crossval() (in module WORC.classification.crossval)
CsvDetector (class in WORC.detectors.detectors)
curve_thresholding() (in module WORC.plotting.plot_ROC)
custom_config_overrides() (WORC.facade.helpers.configbuilder.ConfigBuilder method)
D
DebugDetector (class in WORC.detectors.detectors)
decision_function() (WORC.classification.SearchCV.BaseSearchCV method)
(WORC.classification.SearchCV.Ensemble method)
Decomposition() (in module WORC.featureprocessing.Decomposition)
defaultconfig() (WORC.WORC.WORC method)
delete_cc_para() (in module WORC.classification.fitandscore)
delete_nonestimator_parameters() (in module WORC.classification.fitandscore)
delong_roc_test() (in module WORC.statistics.delong)
delong_roc_variance() (in module WORC.statistics.delong)
dilate_contour() (in module WORC.processing.segmentix)
discrete_uniform (class in WORC.classification.AdvancedSampler)
do_detection() (WORC.detectors.detectors.AbstractDetector method)
do_validation() (WORC.validators.preflightcheck.AbstractValidator method)
download_HeadAndNeck() (in module WORC.exampledata.datadownloader)
download_project() (in module WORC.exampledata.datadownloader)
download_subject() (in module WORC.exampledata.datadownloader)
E
Elastix (class in WORC.tools.Elastix)
Ensemble (class in WORC.classification.SearchCV)
estimator_scoring_overrides() (WORC.facade.helpers.configbuilder.ConfigBuilder method)
Evaluate (class in WORC.tools.Evaluate)
EvaluateValidator (class in WORC.validators.preflightcheck)
example() (in module WORC.plotting.plot_ranked_scores)
execute() (WORC.facade.basicworc.BasicWORC method)
(WORC.facade.simpleworc.SimpleWORC method)
(WORC.tools.Elastix.Elastix method)
(WORC.tools.Evaluate.Evaluate method)
(WORC.tools.Slicer.Slicer method)
(WORC.tools.Transformix.Transformix method)
(WORC.WORC.WORC method)
exp_uniform (class in WORC.classification.AdvancedSampler)
extract_boundary() (in module WORC.plotting.plot_images)
ExtractNLargestBlobsn() (in module WORC.processing.ExtractNLargestBlobsn)
F
f1_weighted_predictproba() (in module WORC.classification.metrics)
factor_validators() (WORC.validators.preflightcheck.ValidatorsFactory static method)
fastDeLong() (in module WORC.statistics.delong)
FeatureConverter() (in module WORC.featureprocessing.FeatureConverter)
features_from_radiomix_xlsx() (WORC.facade.simpleworc.SimpleWORC method)
features_from_this_directory() (WORC.facade.simpleworc.SimpleWORC method)
find_exampledatadir() (in module WORC.tests.test_helpers)
find_testdatadir() (in module WORC.tests.test_helpers)
findlabeldata() (in module WORC.processing.label_processing)
fit() (WORC.classification.estimators.RankedSVM method)
(WORC.classification.ObjectSampler.ObjectSampler method)
(WORC.classification.SearchCV.GridSearchCVfastr method)
(WORC.classification.SearchCV.GridSearchCVJoblib method)
(WORC.classification.SearchCV.RandomizedSearchCVfastr method)
(WORC.classification.SearchCV.RandomizedSearchCVJoblib method)
(WORC.featureprocessing.ICCThreshold.ICCThreshold method)
(WORC.featureprocessing.Imputer.Imputer method)
(WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper method)
(WORC.featureprocessing.Preprocessor.Preprocessor method)
(WORC.featureprocessing.Relief.SelectMulticlassRelief method)
(WORC.featureprocessing.Scalers.LogStandardScaler method)
(WORC.featureprocessing.Scalers.RobustStandardScaler method)
(WORC.featureprocessing.Scalers.WORCScaler method)
(WORC.featureprocessing.SelectGroups.SelectGroups method)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals method)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method)
(WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean method)
fit_and_score() (in module WORC.classification.fitandscore)
fit_thresholds() (in module WORC.plotting.plot_estimator_performance)
flatten_object() (in module WORC.plotting.plot_ranked_scores)
fullprint() (WORC.facade.helpers.configbuilder.ConfigBuilder method)
G
generate_feature_boxplots() (in module WORC.plotting.plot_boxplot_features)
generate_performance_boxplots() (in module WORC.plotting.plot_boxplot_performance)
get_ring() (in module WORC.processing.segmentix)
getparametermap() (WORC.tools.Elastix.Elastix method)
GridSearchCVfastr (class in WORC.classification.SearchCV)
GridSearchCVJoblib (class in WORC.classification.SearchCV)
H
HostnameDetector (class in WORC.detectors.detectors)
I
ICC() (in module WORC.classification.metrics)
ICC_anova() (in module WORC.classification.metrics)
ICCThreshold (class in WORC.featureprocessing.ICCThreshold)
images_from_this_directory() (WORC.facade.simpleworc.SimpleWORC method)
Imputer (class in WORC.featureprocessing.Imputer)
Inference (class in WORC.tools.Inference)
init_ADASYN() (WORC.classification.ObjectSampler.ObjectSampler method)
init_BorderlineSMOTE() (WORC.classification.ObjectSampler.ObjectSampler method)
init_NearMiss() (WORC.classification.ObjectSampler.ObjectSampler method)
init_NeighbourhoodCleaningRule() (WORC.classification.ObjectSampler.ObjectSampler method)
init_RandomOverSampling() (WORC.classification.ObjectSampler.ObjectSampler method)
init_RandomUnderSampling() (WORC.classification.ObjectSampler.ObjectSampler method)
init_SMOTE() (WORC.classification.ObjectSampler.ObjectSampler method)
init_SMOTEENN() (WORC.classification.ObjectSampler.ObjectSampler method)
init_SMOTETomek() (WORC.classification.ObjectSampler.ObjectSampler method)
InvalidCsvFileException
InvalidLabelsValidator (class in WORC.validators.preflightcheck)
InvalidOrderException
inverse_transform() (WORC.classification.SearchCV.BaseSearchCV method)
(WORC.classification.SearchCV.Ensemble method)
is_empty() (in module WORC.classification.RankedSVM)
L
labels_from_this_file() (WORC.facade.simpleworc.SimpleWORC method)
linstretch() (in module WORC.plotting.linstretch)
LinuxDetector (class in WORC.detectors.detectors)
load_config() (in module WORC.IOparser.config_io_classifier)
(in module WORC.IOparser.config_io_combat)
(in module WORC.IOparser.config_io_PyRadiomics)
(in module WORC.IOparser.config_preprocessing)
(in module WORC.IOparser.config_segmentix)
(in module WORC.IOparser.config_WORC)
load_config_XNAT() (in module WORC.processing.label_processing)
load_data() (in module WORC.IOparser.file_io)
load_features() (in module WORC.IOparser.file_io)
load_label_csv() (in module WORC.processing.label_processing)
load_label_txt() (in module WORC.processing.label_processing)
load_label_XNAT() (in module WORC.processing.label_processing)
load_labels() (in module WORC.processing.label_processing)
log_uniform (class in WORC.classification.AdvancedSampler)
LogStandardScaler (class in WORC.featureprocessing.Scalers)
LOO_cross_validation() (in module WORC.classification.crossval)
M
main() (in module WORC.plotting.plot_barchart)
(in module WORC.plotting.plot_estimator_performance)
(in module WORC.plotting.plot_ranked_scores)
(in module WORC.plotting.plot_ROC)
(in module WORC.plotting.plotminmaxresponse)
(in module WORC.plotting.scatterplot)
(in module WORC.resources.fastr_tests.CalcFeatures_test)
(in module WORC.resources.fastr_tests.elastix_test)
(in module WORC.resources.fastr_tests.segmentix_test)
(in module WORC.tests.WORCTutorialSimple_travis_regression)
make_scatterplot() (in module WORC.plotting.scatterplot)
manhattan_importance() (in module WORC.plotting.plot_pvalues_features)
mask_contour() (in module WORC.processing.segmentix)
match() (WORC.processing.classes.switch method)
MinSubjectsValidator (class in WORC.validators.preflightcheck)
module
WORC.__init__
WORC.addexceptions
WORC.classification
WORC.classification.AdvancedSampler
WORC.classification.construct_classifier
WORC.classification.createfixedsplits
WORC.classification.crossval
WORC.classification.estimators
WORC.classification.fitandscore
WORC.classification.metrics
WORC.classification.ObjectSampler
WORC.classification.parameter_optimization
WORC.classification.RankedSVM
WORC.classification.regressors
WORC.classification.SearchCV
WORC.classification.trainclassifier
WORC.detectors.detectors
WORC.exampledata.create_example_data
WORC.exampledata.datadownloader
WORC.facade
WORC.facade.basicworc
WORC.facade.helpers.configbuilder
WORC.facade.helpers.exceptions
WORC.facade.helpers.processing
WORC.facade.simpleworc
WORC.featureprocessing
WORC.featureprocessing.ComBat
WORC.featureprocessing.Decomposition
WORC.featureprocessing.FeatureConverter
WORC.featureprocessing.ICCThreshold
WORC.featureprocessing.Imputer
WORC.featureprocessing.OneHotEncoderWrapper
WORC.featureprocessing.Preprocessor
WORC.featureprocessing.Relief
WORC.featureprocessing.Scalers
WORC.featureprocessing.SelectGroups
WORC.featureprocessing.SelectIndividuals
WORC.featureprocessing.StatisticalTestFeatures
WORC.featureprocessing.StatisticalTestThreshold
WORC.featureprocessing.VarianceThreshold
WORC.IOparser.config_io_classifier
WORC.IOparser.config_io_combat
WORC.IOparser.config_io_PyRadiomics
WORC.IOparser.config_preprocessing
WORC.IOparser.config_segmentix
WORC.IOparser.config_WORC
WORC.IOparser.file_io
WORC.plotting
WORC.plotting.compute_CI
WORC.plotting.linstretch
WORC.plotting.plot_barchart
WORC.plotting.plot_boxplot_features
WORC.plotting.plot_boxplot_performance
WORC.plotting.plot_errors
WORC.plotting.plot_estimator_performance
WORC.plotting.plot_hyperparameters
WORC.plotting.plot_images
WORC.plotting.plot_pvalues_features
WORC.plotting.plot_ranked_scores
WORC.plotting.plot_ROC
WORC.plotting.plotminmaxresponse
WORC.plotting.scatterplot
WORC.processing.classes
WORC.processing.ExtractNLargestBlobsn
WORC.processing.helpers
WORC.processing.label_processing
WORC.processing.preprocessing
WORC.processing.segmentix
WORC.resources.fastr_tests.CalcFeatures_test
WORC.resources.fastr_tests.elastix_test
WORC.resources.fastr_tests.segmentix_test
WORC.resources.fastr_tools
WORC.statistics.delong
WORC.tests.test_combat
WORC.tests.test_helpers
WORC.tests.test_iccthreshold
WORC.tests.test_plot_errors
WORC.tests.WORCTutorialSimple_travis_regression
WORC.tools.createfixedsplits
WORC.tools.Elastix
WORC.tools.Evaluate
WORC.tools.Inference
WORC.tools.Slicer
WORC.tools.Transformix
WORC.validators.preflightcheck
WORC.WORC
multi_class_auc() (in module WORC.classification.metrics)
multi_class_auc_score() (in module WORC.classification.metrics)
multi_class_relief() (WORC.featureprocessing.Relief.SelectMulticlassRelief method)
N
neg_dual_func() (in module WORC.classification.RankedSVM)
nocrossval() (in module WORC.classification.crossval)
NoFeaturesFoundException
NoImagesFoundException
normalize_image() (in module WORC.processing.preprocessing)
NoSegmentationsFoundException
O
ObjectSampler (class in WORC.classification.ObjectSampler)
OneHotEncoderWrapper (class in WORC.featureprocessing.OneHotEncoderWrapper)
P
pairwise_auc() (in module WORC.classification.metrics)
paracheck() (in module WORC.plotting.plot_barchart)
PathNotFoundException
performance_multilabel() (in module WORC.classification.metrics)
performance_singlelabel() (in module WORC.classification.metrics)
plot_barchart() (in module WORC.plotting.plot_barchart)
plot_bars() (in module WORC.plotting.plot_barchart)
plot_boxplot_features() (in module WORC.plotting.plot_boxplot_features)
plot_errors() (in module WORC.plotting.plot_errors)
plot_estimator_performance() (in module WORC.plotting.plot_estimator_performance)
plot_hyperparameters() (in module WORC.plotting.plot_hyperparameters)
plot_im_and_overlay() (in module WORC.plotting.plot_images)
plot_PRC_CIc() (in module WORC.plotting.plot_ROC)
plot_ranked_images() (in module WORC.plotting.plot_ranked_scores)
plot_ranked_percentages() (in module WORC.plotting.plot_ranked_scores)
plot_ranked_posteriors() (in module WORC.plotting.plot_ranked_scores)
plot_ranked_scores() (in module WORC.plotting.plot_ranked_scores)
plot_ROC() (in module WORC.plotting.plot_ROC)
plot_ROC_CIc() (in module WORC.plotting.plot_ROC)
plot_single_PRC() (in module WORC.plotting.plot_ROC)
plot_single_ROC() (in module WORC.plotting.plot_ROC)
predict() (WORC.classification.estimators.RankedSVM method)
(WORC.classification.SearchCV.BaseSearchCV method)
(WORC.classification.SearchCV.Ensemble method)
predict_labels() (WORC.facade.simpleworc.SimpleWORC method)
predict_log_proba() (WORC.classification.SearchCV.BaseSearchCV method)
(WORC.classification.SearchCV.Ensemble method)
predict_proba() (WORC.classification.estimators.RankedSVM method)
(WORC.classification.SearchCV.BaseSearchCV method)
(WORC.classification.SearchCV.Ensemble method)
preprocess() (in module WORC.processing.preprocessing)
(WORC.classification.SearchCV.BaseSearchCV method)
Preprocessor (class in WORC.featureprocessing.Preprocessor)
process_fit() (WORC.classification.SearchCV.BaseSearchCV method)
R
random_search_parameters() (in module WORC.classification.parameter_optimization)
random_split_cross_validation() (in module WORC.classification.crossval)
RandomizedSearchCVfastr (class in WORC.classification.SearchCV)
RandomizedSearchCVJoblib (class in WORC.classification.SearchCV)
RankedSVM (class in WORC.classification.estimators)
RankSVM_test() (in module WORC.classification.RankedSVM)
RankSVM_test_original() (in module WORC.classification.RankedSVM)
RankSVM_train() (in module WORC.classification.RankedSVM)
RankSVM_train_old() (in module WORC.classification.RankedSVM)
refit_and_score() (WORC.classification.SearchCV.BaseSearchCV method)
regression() (WORC.facade.simpleworc.SimpleWORC method)
replacenan() (in module WORC.classification.fitandscore)
resample_image() (in module WORC.processing.helpers)
rms_score() (in module WORC.classification.SearchCV)
RobustStandardScaler (class in WORC.featureprocessing.Scalers)
rvs() (WORC.classification.AdvancedSampler.boolean_uniform method)
(WORC.classification.AdvancedSampler.discrete_uniform method)
(WORC.classification.AdvancedSampler.exp_uniform method)
(WORC.classification.AdvancedSampler.log_uniform method)
S
SamplesWarning (class in WORC.validators.preflightcheck)
sar_score() (in module WORC.classification.SearchCV)
save_config() (WORC.WORC.WORC method)
score() (WORC.classification.SearchCV.BaseSearchCV method)
segmentations_from_this_directory() (WORC.facade.simpleworc.SimpleWORC method)
segmentix() (in module WORC.processing.segmentix)
SelectGroups (class in WORC.featureprocessing.SelectGroups)
SelectIndividuals (class in WORC.featureprocessing.SelectIndividuals)
SelectMulticlassRelief (class in WORC.featureprocessing.Relief)
selfeat_variance() (in module WORC.featureprocessing.VarianceThreshold)
semantics_from_this_file() (WORC.facade.simpleworc.SimpleWORC method)
set() (WORC.tools.Evaluate.Evaluate method)
(WORC.tools.Slicer.Slicer method)
(WORC.WORC.WORC method)
set_fixed_splits() (WORC.facade.simpleworc.SimpleWORC method)
set_multicore_execution() (WORC.facade.simpleworc.SimpleWORC method)
set_tmpdir() (WORC.facade.simpleworc.SimpleWORC method)
SimpleValidator (class in WORC.validators.preflightcheck)
SimpleWORC (class in WORC.facade.simpleworc)
single_class_relief() (WORC.featureprocessing.Relief.SelectMulticlassRelief method)
sink_data() (in module WORC.resources.fastr_tests.CalcFeatures_test)
(in module WORC.resources.fastr_tests.elastix_test)
(in module WORC.resources.fastr_tests.segmentix_test)
Slicer (class in WORC.tools.Slicer)
slicer() (in module WORC.plotting.plot_images)
source_data() (in module WORC.resources.fastr_tests.CalcFeatures_test)
(in module WORC.resources.fastr_tests.elastix_test)
(in module WORC.resources.fastr_tests.segmentix_test)
StatisticalTestFeatures() (in module WORC.featureprocessing.StatisticalTestFeatures)
StatisticalTestThreshold (class in WORC.featureprocessing.StatisticalTestThreshold)
survival() (WORC.facade.simpleworc.SimpleWORC method)
switch (class in WORC.processing.classes)
Synthetictest() (in module WORC.featureprocessing.ComBat)
T
test() (in module WORC.featureprocessing.OneHotEncoderWrapper)
(in module WORC.featureprocessing.Scalers)
(in module WORC.plotting.plot_boxplot_performance)
test_combat() (in module WORC.tests.test_combat)
test_combat_fastr() (in module WORC.tests.test_combat)
test_iccthreshold() (in module WORC.tests.test_iccthreshold)
test_plot_errors() (in module WORC.tests.test_plot_errors)
test_RS_Ensemble() (in module WORC.classification.crossval)
Tools (class in WORC.WORC)
trainclassifier() (in module WORC.classification.trainclassifier)
transform() (WORC.classification.ObjectSampler.ObjectSampler method)
(WORC.classification.SearchCV.BaseSearchCV method)
(WORC.classification.SearchCV.Ensemble method)
(WORC.featureprocessing.ICCThreshold.ICCThreshold method)
(WORC.featureprocessing.Imputer.Imputer method)
(WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper method)
(WORC.featureprocessing.Preprocessor.Preprocessor method)
(WORC.featureprocessing.Relief.SelectMulticlassRelief method)
(WORC.featureprocessing.Scalers.WORCScaler method)
(WORC.featureprocessing.SelectGroups.SelectGroups method)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals method)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method)
(WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean method)
Transformix (class in WORC.tools.Transformix)
transpose_image() (in module WORC.processing.helpers)
V
ValidatorsFactory (class in WORC.validators.preflightcheck)
VarianceThresholdMean (class in WORC.featureprocessing.VarianceThreshold)
W
WORC (class in WORC.WORC)
WORC.__init__
module
WORC.addexceptions
module
WORC.classification
module
WORC.classification.AdvancedSampler
module
WORC.classification.construct_classifier
module
WORC.classification.createfixedsplits
module
WORC.classification.crossval
module
WORC.classification.estimators
module
WORC.classification.fitandscore
module
WORC.classification.metrics
module
WORC.classification.ObjectSampler
module
WORC.classification.parameter_optimization
module
WORC.classification.RankedSVM
module
WORC.classification.regressors
module
WORC.classification.SearchCV
module
WORC.classification.trainclassifier
module
WORC.detectors.detectors
module
WORC.exampledata.create_example_data
module
WORC.exampledata.datadownloader
module
WORC.facade
module
WORC.facade.basicworc
module
WORC.facade.helpers.configbuilder
module
WORC.facade.helpers.exceptions
module
WORC.facade.helpers.processing
module
WORC.facade.simpleworc
module
WORC.featureprocessing
module
WORC.featureprocessing.ComBat
module
WORC.featureprocessing.Decomposition
module
WORC.featureprocessing.FeatureConverter
module
WORC.featureprocessing.ICCThreshold
module
WORC.featureprocessing.Imputer
module
WORC.featureprocessing.OneHotEncoderWrapper
module
WORC.featureprocessing.Preprocessor
module
WORC.featureprocessing.Relief
module
WORC.featureprocessing.Scalers
module
WORC.featureprocessing.SelectGroups
module
WORC.featureprocessing.SelectIndividuals
module
WORC.featureprocessing.StatisticalTestFeatures
module
WORC.featureprocessing.StatisticalTestThreshold
module
WORC.featureprocessing.VarianceThreshold
module
WORC.IOparser.config_io_classifier
module
WORC.IOparser.config_io_combat
module
WORC.IOparser.config_io_PyRadiomics
module
WORC.IOparser.config_preprocessing
module
WORC.IOparser.config_segmentix
module
WORC.IOparser.config_WORC
module
WORC.IOparser.file_io
module
WORC.plotting
module
WORC.plotting.compute_CI
module
WORC.plotting.linstretch
module
WORC.plotting.plot_barchart
module
WORC.plotting.plot_boxplot_features
module
WORC.plotting.plot_boxplot_performance
module
WORC.plotting.plot_errors
module
WORC.plotting.plot_estimator_performance
module
WORC.plotting.plot_hyperparameters
module
WORC.plotting.plot_images
module
WORC.plotting.plot_pvalues_features
module
WORC.plotting.plot_ranked_scores
module
WORC.plotting.plot_ROC
module
WORC.plotting.plotminmaxresponse
module
WORC.plotting.scatterplot
module
WORC.processing.classes
module
WORC.processing.ExtractNLargestBlobsn
module
WORC.processing.helpers
module
WORC.processing.label_processing
module
WORC.processing.preprocessing
module
WORC.processing.segmentix
module
WORC.resources.fastr_tests.CalcFeatures_test
module
WORC.resources.fastr_tests.elastix_test
module
WORC.resources.fastr_tests.segmentix_test
module
WORC.resources.fastr_tools
module
WORC.statistics.delong
module
WORC.tests.test_combat
module
WORC.tests.test_helpers
module
WORC.tests.test_iccthreshold
module
WORC.tests.test_plot_errors
module
WORC.tests.WORCTutorialSimple_travis_regression
module
WORC.tools.createfixedsplits
module
WORC.tools.Elastix
module
WORC.tools.Evaluate
module
WORC.tools.Inference
module
WORC.tools.Slicer
module
WORC.tools.Transformix
module
WORC.validators.preflightcheck
module
WORC.WORC
module
WORCAssertionError
WORCDirectoryDetector (class in WORC.detectors.detectors)
WORCError
WORCIndexError
WORCIOError
WORCKeyError
WORCNotImplementedError
WORCScaler (class in WORC.featureprocessing.Scalers)
WORCTypeError
WORCValueError
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