Index

_

__abstractmethods__ (WORC.classification.SearchCV.BaseSearchCV attribute) (WORC.classification.SearchCV.BaseSearchCVfastr attribute) (WORC.classification.SearchCV.BaseSearchCVJoblib attribute) (WORC.classification.SearchCV.BaseSearchCVSMAC attribute) (WORC.classification.SearchCV.Ensemble attribute) (WORC.classification.SearchCV.GridSearchCVfastr attribute) (WORC.classification.SearchCV.GridSearchCVJoblib attribute) (WORC.classification.SearchCV.GuidedSearchCVSMAC attribute) (WORC.classification.SearchCV.RandomizedSearchCVfastr attribute) (WORC.classification.SearchCV.RandomizedSearchCVJoblib attribute) (WORC.detectors.detectors.AbstractDetector attribute) (WORC.detectors.detectors.BigrClusterDetector attribute) (WORC.detectors.detectors.CsvDetector attribute) (WORC.detectors.detectors.DebugDetector attribute) (WORC.detectors.detectors.HostnameDetector attribute) (WORC.detectors.detectors.LinuxDetector attribute) (WORC.detectors.detectors.SnelliusClusterDetector attribute) (WORC.detectors.detectors.WORCDirectoryDetector attribute) (WORC.featureprocessing.ICCThreshold.ICCThreshold attribute) (WORC.featureprocessing.Relief.SelectMulticlassRelief attribute) (WORC.featureprocessing.SelectGroups.SelectGroups attribute) (WORC.featureprocessing.SelectIndividuals.SelectIndividuals attribute) (WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold attribute) (WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean attribute) (WORC.validators.preflightcheck.AbstractValidator attribute) (WORC.validators.preflightcheck.InvalidLabelsValidator attribute) (WORC.validators.preflightcheck.MinSubjectsValidator attribute) (WORC.validators.preflightcheck.SamplesWarning attribute) (WORC.validators.preflightcheck.SimpleValidator attribute) __dict__ (WORC.classification.AdvancedSampler.AdvancedSampler attribute) (WORC.classification.AdvancedSampler.boolean_uniform attribute) (WORC.classification.AdvancedSampler.discrete_uniform attribute) (WORC.classification.AdvancedSampler.exp_uniform attribute) (WORC.classification.AdvancedSampler.log_uniform attribute) (WORC.classification.ObjectSampler.ObjectSampler attribute) (WORC.detectors.detectors.AbstractDetector attribute) (WORC.facade.helpers.configbuilder.ConfigBuilder attribute) (WORC.facade.simpleworc.SimpleWORC attribute) (WORC.featureprocessing.Imputer.Imputer attribute) (WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper attribute) (WORC.featureprocessing.Preprocessor.Preprocessor attribute) (WORC.processing.classes.switch attribute) (WORC.tools.Elastix.Elastix attribute) (WORC.tools.Evaluate.Evaluate attribute) (WORC.tools.fingerprinting.Fingerprinter attribute) (WORC.tools.Inference.Inference attribute) (WORC.tools.Slicer.Slicer attribute) (WORC.tools.Transformix.Transformix attribute) (WORC.validators.preflightcheck.AbstractValidator attribute) (WORC.validators.preflightcheck.ValidatorsFactory attribute) (WORC.WORC.Tools attribute) (WORC.WORC.WORC attribute) __init__() (WORC.classification.AdvancedSampler.AdvancedSampler method) (WORC.classification.AdvancedSampler.boolean_uniform method) (WORC.classification.AdvancedSampler.discrete_uniform method) (WORC.classification.AdvancedSampler.exp_uniform method) (WORC.classification.AdvancedSampler.log_uniform method) (WORC.classification.ObjectSampler.ObjectSampler method) (WORC.classification.SearchCV.BaseSearchCV method) (WORC.classification.SearchCV.Ensemble method) (WORC.classification.SearchCV.GridSearchCVfastr method) (WORC.classification.SearchCV.GridSearchCVJoblib method) (WORC.classification.SearchCV.GuidedSearchCVSMAC method) (WORC.classification.SearchCV.RandomizedSearchCVfastr method) (WORC.classification.SearchCV.RandomizedSearchCVJoblib method) (WORC.detectors.detectors.CsvDetector method) (WORC.detectors.detectors.HostnameDetector method) (WORC.facade.basicworc.BasicWORC method) (WORC.facade.helpers.configbuilder.ConfigBuilder method) (WORC.facade.helpers.exceptions.InvalidCsvFileException method) (WORC.facade.helpers.exceptions.InvalidOrderException method) (WORC.facade.helpers.exceptions.NoFeaturesFoundException method) (WORC.facade.helpers.exceptions.NoImagesFoundException method) (WORC.facade.helpers.exceptions.NoMasksFoundException method) (WORC.facade.helpers.exceptions.NoSegmentationsFoundException method) (WORC.facade.helpers.exceptions.PathNotFoundException method) (WORC.facade.simpleworc.SimpleWORC method) (WORC.featureprocessing.ICCThreshold.ICCThreshold method) (WORC.featureprocessing.Imputer.Imputer method) (WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper method) (WORC.featureprocessing.Preprocessor.Preprocessor method) (WORC.featureprocessing.Relief.SelectMulticlassRelief method) (WORC.featureprocessing.Scalers.WORCScaler method) (WORC.featureprocessing.SelectGroups.SelectGroups method) (WORC.featureprocessing.SelectIndividuals.SelectIndividuals method) (WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method) (WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean method) (WORC.processing.classes.switch method) (WORC.tools.Elastix.Elastix method) (WORC.tools.Evaluate.Evaluate method) (WORC.tools.fingerprinting.Fingerprinter method) (WORC.tools.Inference.Inference method) (WORC.tools.Slicer.Slicer method) (WORC.tools.Transformix.Transformix method) (WORC.WORC.Tools method) (WORC.WORC.WORC method) __iter__() (WORC.classification.AdvancedSampler.AdvancedSampler method) (WORC.processing.classes.switch method) __len__() (WORC.classification.AdvancedSampler.AdvancedSampler method) __module__ (WORC.addexceptions.WORCAssertionError attribute) (WORC.addexceptions.WORCError attribute) (WORC.addexceptions.WORCIndexError attribute) (WORC.addexceptions.WORCIOError attribute) (WORC.addexceptions.WORCKeyError attribute) (WORC.addexceptions.WORCNotImplementedError attribute) (WORC.addexceptions.WORCTypeError attribute) (WORC.addexceptions.WORCValueError attribute) (WORC.classification.AdvancedSampler.AdvancedSampler attribute) (WORC.classification.AdvancedSampler.boolean_uniform attribute) (WORC.classification.AdvancedSampler.discrete_uniform attribute) (WORC.classification.AdvancedSampler.exp_uniform attribute) (WORC.classification.AdvancedSampler.log_uniform attribute) (WORC.classification.ObjectSampler.ObjectSampler attribute) (WORC.classification.SearchCV.BaseSearchCV attribute) (WORC.classification.SearchCV.BaseSearchCVfastr attribute) (WORC.classification.SearchCV.BaseSearchCVJoblib attribute) (WORC.classification.SearchCV.BaseSearchCVSMAC attribute) (WORC.classification.SearchCV.Ensemble attribute) (WORC.classification.SearchCV.GridSearchCVfastr attribute) (WORC.classification.SearchCV.GridSearchCVJoblib attribute) (WORC.classification.SearchCV.GuidedSearchCVSMAC attribute) (WORC.classification.SearchCV.RandomizedSearchCVfastr attribute) (WORC.classification.SearchCV.RandomizedSearchCVJoblib attribute) (WORC.detectors.detectors.AbstractDetector attribute) (WORC.detectors.detectors.BigrClusterDetector attribute) (WORC.detectors.detectors.CsvDetector attribute) (WORC.detectors.detectors.DebugDetector attribute) (WORC.detectors.detectors.HostnameDetector attribute) (WORC.detectors.detectors.LinuxDetector attribute) (WORC.detectors.detectors.SnelliusClusterDetector attribute) (WORC.detectors.detectors.WORCDirectoryDetector attribute) (WORC.facade.basicworc.BasicWORC attribute) (WORC.facade.helpers.configbuilder.ConfigBuilder attribute) (WORC.facade.helpers.exceptions.InvalidCsvFileException attribute) (WORC.facade.helpers.exceptions.InvalidOrderException attribute) (WORC.facade.helpers.exceptions.NoFeaturesFoundException attribute) (WORC.facade.helpers.exceptions.NoImagesFoundException attribute) (WORC.facade.helpers.exceptions.NoMasksFoundException attribute) (WORC.facade.helpers.exceptions.NoSegmentationsFoundException attribute) (WORC.facade.helpers.exceptions.PathNotFoundException attribute) (WORC.facade.simpleworc.SimpleWORC attribute) (WORC.featureprocessing.ICCThreshold.ICCThreshold attribute) (WORC.featureprocessing.Imputer.Imputer attribute) (WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper attribute) (WORC.featureprocessing.Preprocessor.Preprocessor attribute) (WORC.featureprocessing.Relief.SelectMulticlassRelief attribute) (WORC.featureprocessing.Scalers.LogStandardScaler attribute) (WORC.featureprocessing.Scalers.RobustStandardScaler attribute) (WORC.featureprocessing.Scalers.WORCScaler attribute) (WORC.featureprocessing.SelectGroups.SelectGroups attribute) (WORC.featureprocessing.SelectIndividuals.SelectIndividuals attribute) (WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold attribute) (WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean attribute) (WORC.processing.classes.switch attribute) (WORC.tools.Elastix.Elastix attribute) (WORC.tools.Evaluate.Evaluate attribute) (WORC.tools.fingerprinting.Fingerprinter attribute) (WORC.tools.Inference.Inference attribute) (WORC.tools.Slicer.Slicer attribute) (WORC.tools.Transformix.Transformix attribute) (WORC.validators.preflightcheck.AbstractValidator attribute) (WORC.validators.preflightcheck.InvalidLabelsValidator attribute) (WORC.validators.preflightcheck.MinSubjectsValidator attribute) (WORC.validators.preflightcheck.SamplesWarning attribute) (WORC.validators.preflightcheck.SimpleValidator attribute) (WORC.validators.preflightcheck.ValidatorsFactory attribute) (WORC.WORC.Tools attribute) (WORC.WORC.WORC attribute)

__weakref__ (WORC.addexceptions.WORCError attribute) (WORC.addexceptions.WORCIOError attribute) (WORC.classification.AdvancedSampler.AdvancedSampler attribute) (WORC.classification.AdvancedSampler.boolean_uniform attribute) (WORC.classification.AdvancedSampler.discrete_uniform attribute) (WORC.classification.AdvancedSampler.exp_uniform attribute) (WORC.classification.AdvancedSampler.log_uniform attribute) (WORC.classification.ObjectSampler.ObjectSampler attribute) (WORC.detectors.detectors.AbstractDetector attribute) (WORC.facade.helpers.configbuilder.ConfigBuilder attribute) (WORC.facade.helpers.exceptions.InvalidCsvFileException attribute) (WORC.facade.helpers.exceptions.InvalidOrderException attribute) (WORC.facade.helpers.exceptions.NoFeaturesFoundException attribute) (WORC.facade.helpers.exceptions.NoImagesFoundException attribute) (WORC.facade.helpers.exceptions.NoMasksFoundException attribute) (WORC.facade.helpers.exceptions.NoSegmentationsFoundException attribute) (WORC.facade.helpers.exceptions.PathNotFoundException attribute) (WORC.facade.simpleworc.SimpleWORC attribute) (WORC.featureprocessing.Imputer.Imputer attribute) (WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper attribute) (WORC.featureprocessing.Preprocessor.Preprocessor attribute) (WORC.processing.classes.switch attribute) (WORC.tools.Elastix.Elastix attribute) (WORC.tools.Evaluate.Evaluate attribute) (WORC.tools.fingerprinting.Fingerprinter attribute) (WORC.tools.Inference.Inference attribute) (WORC.tools.Slicer.Slicer attribute) (WORC.tools.Transformix.Transformix attribute) (WORC.validators.preflightcheck.AbstractValidator attribute) (WORC.validators.preflightcheck.ValidatorsFactory attribute) (WORC.WORC.Tools attribute) (WORC.WORC.WORC attribute)

A

AbstractDetector (class in WORC.detectors.detectors) AbstractValidator (class in WORC.validators.preflightcheck) add_ComBat() (WORC.WORC.WORC method) add_config_overrides() (WORC.facade.simpleworc.SimpleWORC method) add_elastix() (WORC.WORC.WORC method) add_elastix_sourcesandsinks() (WORC.WORC.WORC method) add_evaluation() (WORC.facade.simpleworc.SimpleWORC method) (WORC.WORC.WORC method)

add_feature_calculator() (WORC.WORC.WORC method) add_fingerprinter() (WORC.WORC.WORC method) add_parameters_to_grid() (in module WORC.classification.trainclassifier) add_preprocessing() (WORC.WORC.WORC method) add_segmentix() (WORC.WORC.WORC method) add_tools() (WORC.WORC.WORC method) addchangeorder() (WORC.tools.Elastix.Elastix method) AdvancedSampler (class in WORC.classification.AdvancedSampler)

B

BaseSearchCV (class in WORC.classification.SearchCV) BaseSearchCVfastr (class in WORC.classification.SearchCV) BaseSearchCVJoblib (class in WORC.classification.SearchCV) BaseSearchCVSMAC (class in WORC.classification.SearchCV) BasicWORC (class in WORC.facade.basicworc) bbox_2D() (in module WORC.plotting.plot_images) bias_correct_image() (in module WORC.processing.preprocessing)

BigrClusterDetector (class in WORC.detectors.detectors) binary_classification() (WORC.facade.simpleworc.SimpleWORC method) boolean_uniform (class in WORC.classification.AdvancedSampler) build() (WORC.WORC.WORC method) build_config() (WORC.facade.helpers.configbuilder.ConfigBuilder method) build_inference() (WORC.WORC.WORC method) build_smac_config() (in module WORC.classification.smac) build_training() (WORC.WORC.WORC method)

C

calc_pvalue() (in module WORC.statistics.delong) check_image_orientation() (in module WORC.processing.helpers) check_multimetric_scoring() (in module WORC.classification.metrics) check_scoring() (in module WORC.classification.metrics) chunks() (in module WORC.classification.SearchCV) chunksdict() (in module WORC.classification.SearchCV) clip_image() (in module WORC.processing.preprocessing) coarse_overrides() (WORC.facade.helpers.configbuilder.ConfigBuilder method) ComBat() (in module WORC.featureprocessing.ComBat) ComBatMatlab() (in module WORC.featureprocessing.ComBat) ComBatPython() (in module WORC.featureprocessing.ComBat) combine_multiple_estimators() (in module WORC.plotting.plot_estimator_performance) compute_confidence() (in module WORC.plotting.compute_CI) compute_confidence_bootstrap() (in module WORC.plotting.compute_CI) compute_confidence_logit() (in module WORC.plotting.compute_CI) compute_ground_truth_statistics() (in module WORC.statistics.delong) compute_midrank() (in module WORC.statistics.delong) compute_midrank_weight() (in module WORC.statistics.delong) compute_statistics() (in module WORC.plotting.plot_estimator_performance) ConfigBuilder (class in WORC.facade.helpers.configbuilder) construct_classifier() (in module WORC.classification.construct_classifier) construct_SVM() (in module WORC.classification.construct_classifier) convert_config_pyradiomics() (in module WORC.IOparser.file_io) convert_features_ICC_threshold() (in module WORC.featureprocessing.ICCThreshold) convert_PREDICT() (in module WORC.featureprocessing.FeatureConverter) convert_pyradiomics() (in module WORC.featureprocessing.FeatureConverter)

convert_pyradiomics_featurevector() (in module WORC.featureprocessing.FeatureConverter) convert_radiomix_features() (in module WORC.facade.helpers.processing) count_num_subjects() (WORC.facade.simpleworc.SimpleWORC method) count_parameters() (in module WORC.plotting.plot_barchart) create_bbox() (WORC.tools.Elastix.Elastix method) create_ensemble() (WORC.classification.SearchCV.BaseSearchCV method) create_links_Addon() (WORC.tools.Evaluate.Evaluate method) create_links_Standalone() (WORC.tools.Evaluate.Evaluate method) create_network() (in module WORC.resources.fastr_tests.CalcFeatures_test) (in module WORC.resources.fastr_tests.elastix_test) (in module WORC.resources.fastr_tests.segmentix_test) (WORC.tools.Elastix.Elastix method) (WORC.tools.Evaluate.Evaluate method) (WORC.tools.Inference.Inference method) (WORC.tools.Slicer.Slicer method) (WORC.tools.Transformix.Transformix method) create_param_grid() (in module WORC.classification.construct_classifier) create_random_features() (in module WORC.exampledata.create_example_data) create_random_imageandmask() (in module WORC.exampledata.create_example_data) create_SimpeITKimage() (in module WORC.tests.test_helpers) create_SimpeITKimage_mask() (in module WORC.tests.test_helpers) createfixedsplits() (in module WORC.classification.createfixedsplits) (in module WORC.tools.createfixedsplits) crossval() (in module WORC.classification.crossval) CsvDetector (class in WORC.detectors.detectors) curve_thresholding() (in module WORC.plotting.plot_ROC) custom_config_overrides() (WORC.facade.helpers.configbuilder.ConfigBuilder method)

D

DebugDetector (class in WORC.detectors.detectors) decision_function() (WORC.classification.SearchCV.BaseSearchCV method) (WORC.classification.SearchCV.Ensemble method) Decomposition() (in module WORC.featureprocessing.Decomposition) defaultconfig() (WORC.WORC.WORC method) delete_cc_para() (in module WORC.classification.fitandscore) delete_nonestimator_parameters() (in module WORC.classification.fitandscore) delong_roc_test() (in module WORC.statistics.delong)

delong_roc_variance() (in module WORC.statistics.delong) dilate_contour() (in module WORC.processing.segmentix) discrete_uniform (class in WORC.classification.AdvancedSampler) do_detection() (WORC.detectors.detectors.AbstractDetector method) do_validation() (WORC.validators.preflightcheck.AbstractValidator method) download_HeadAndNeck() (in module WORC.exampledata.datadownloader) download_project() (in module WORC.exampledata.datadownloader) download_subject() (in module WORC.exampledata.datadownloader)

E

Elastix (class in WORC.tools.Elastix) Ensemble (class in WORC.classification.SearchCV) estimator_scoring_overrides() (WORC.facade.helpers.configbuilder.ConfigBuilder method) Evaluate (class in WORC.tools.Evaluate) execute() (WORC.facade.basicworc.BasicWORC method) (WORC.facade.simpleworc.SimpleWORC method) (WORC.tools.Elastix.Elastix method) (WORC.tools.Evaluate.Evaluate method) (WORC.tools.fingerprinting.Fingerprinter method) (WORC.tools.Slicer.Slicer method) (WORC.tools.Transformix.Transformix method) (WORC.WORC.WORC method)

exp_uniform (class in WORC.classification.AdvancedSampler) export_hyper_params_to_latex() (in module WORC.export.hyper_params_exporter) extract_boundary() (in module WORC.plotting.plot_images) ExtractNLargestBlobsn() (in module WORC.processing.ExtractNLargestBlobsn)

F

f1_weighted_predictproba() (in module WORC.classification.metrics) factor_validators() (WORC.validators.preflightcheck.ValidatorsFactory static method) fastDeLong() (in module WORC.statistics.delong) FeatureConverter() (in module WORC.featureprocessing.FeatureConverter) features_from_radiomix_xlsx() (WORC.facade.simpleworc.SimpleWORC method) features_from_this_directory() (WORC.facade.simpleworc.SimpleWORC method) find_exampledatadir() (in module WORC.tests.test_helpers) find_testdatadir() (in module WORC.tests.test_helpers) findlabeldata() (in module WORC.processing.label_processing) Fingerprinter (class in WORC.tools.fingerprinting) fit() (WORC.classification.ObjectSampler.ObjectSampler method) (WORC.classification.SearchCV.GridSearchCVfastr method) (WORC.classification.SearchCV.GridSearchCVJoblib method) (WORC.classification.SearchCV.GuidedSearchCVSMAC method) (WORC.classification.SearchCV.RandomizedSearchCVfastr method) (WORC.classification.SearchCV.RandomizedSearchCVJoblib method) (WORC.featureprocessing.ICCThreshold.ICCThreshold method) (WORC.featureprocessing.Imputer.Imputer method) (WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper method) (WORC.featureprocessing.Preprocessor.Preprocessor method) (WORC.featureprocessing.Relief.SelectMulticlassRelief method) (WORC.featureprocessing.Scalers.LogStandardScaler method) (WORC.featureprocessing.Scalers.RobustStandardScaler method) (WORC.featureprocessing.Scalers.WORCScaler method) (WORC.featureprocessing.SelectGroups.SelectGroups method) (WORC.featureprocessing.SelectIndividuals.SelectIndividuals method) (WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method) (WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean method)

fit_and_score() (in module WORC.classification.fitandscore) fit_thresholds() (in module WORC.plotting.plot_estimator_performance) flatten_object() (in module WORC.plotting.plot_ranked_scores) fullprint() (WORC.facade.helpers.configbuilder.ConfigBuilder method)

G

generate_feature_boxplots() (in module WORC.plotting.plot_boxplot_features) generate_performance_boxplots() (in module WORC.plotting.plot_boxplot_performance) get_ring() (in module WORC.processing.segmentix) getparametermap() (WORC.tools.Elastix.Elastix method)

GridSearchCVfastr (class in WORC.classification.SearchCV) GridSearchCVJoblib (class in WORC.classification.SearchCV) guided_search_parameters() (in module WORC.classification.parameter_optimization) GuidedSearchCVSMAC (class in WORC.classification.SearchCV)

H

histogram_equalization() (in module WORC.processing.preprocessing)

HostnameDetector (class in WORC.detectors.detectors)

I

ICC() (in module WORC.classification.metrics) ICC_anova() (in module WORC.classification.metrics) ICCThreshold (class in WORC.featureprocessing.ICCThreshold) images_from_this_directory() (WORC.facade.simpleworc.SimpleWORC method) Imputer (class in WORC.featureprocessing.Imputer) Inference (class in WORC.tools.Inference) init_ADASYN() (WORC.classification.ObjectSampler.ObjectSampler method) init_BorderlineSMOTE() (WORC.classification.ObjectSampler.ObjectSampler method) init_NearMiss() (WORC.classification.ObjectSampler.ObjectSampler method) init_NeighbourhoodCleaningRule() (WORC.classification.ObjectSampler.ObjectSampler method)

init_RandomOverSampling() (WORC.classification.ObjectSampler.ObjectSampler method) init_RandomUnderSampling() (WORC.classification.ObjectSampler.ObjectSampler method) init_SMOTE() (WORC.classification.ObjectSampler.ObjectSampler method) init_SMOTEENN() (WORC.classification.ObjectSampler.ObjectSampler method) init_SMOTETomek() (WORC.classification.ObjectSampler.ObjectSampler method) InvalidCsvFileException InvalidLabelsValidator (class in WORC.validators.preflightcheck) InvalidOrderException inverse_transform() (WORC.classification.SearchCV.BaseSearchCV method) (WORC.classification.SearchCV.Ensemble method)

L

labels_from_this_file() (WORC.facade.simpleworc.SimpleWORC method) linstretch() (in module WORC.plotting.linstretch) LinuxDetector (class in WORC.detectors.detectors) load_config() (in module WORC.IOparser.config_io_classifier) (in module WORC.IOparser.config_io_combat) (in module WORC.IOparser.config_io_PyRadiomics) (in module WORC.IOparser.config_preprocessing) (in module WORC.IOparser.config_segmentix) (in module WORC.IOparser.config_WORC)

load_config_XNAT() (in module WORC.processing.label_processing) load_data() (in module WORC.IOparser.file_io) load_features() (in module WORC.IOparser.file_io) load_label_csv() (in module WORC.processing.label_processing) load_label_txt() (in module WORC.processing.label_processing) load_label_XNAT() (in module WORC.processing.label_processing) load_labels() (in module WORC.processing.label_processing) log_uniform (class in WORC.classification.AdvancedSampler) LogStandardScaler (class in WORC.featureprocessing.Scalers) LOO_cross_validation() (in module WORC.classification.crossval)

M

main() (in module WORC.plotting.plot_barchart) (in module WORC.plotting.plot_estimator_performance) (in module WORC.plotting.plot_ranked_scores) (in module WORC.plotting.plot_ROC) (in module WORC.plotting.plotminmaxresponse) (in module WORC.resources.fastr_tests.CalcFeatures_test) (in module WORC.resources.fastr_tests.elastix_test) (in module WORC.resources.fastr_tests.segmentix_test) (in module WORC.tests.WORCTutorialSimple_unittest_multiclass) (in module WORC.tests.WORCTutorialSimple_unittest_regression) manhattan_importance() (in module WORC.plotting.plot_pvalues_features) mask_contour() (in module WORC.processing.segmentix) masks_from_this_directory() (WORC.facade.simpleworc.SimpleWORC method) match() (WORC.processing.classes.switch method) MinSubjectsValidator (class in WORC.validators.preflightcheck) module WORC.__init__ WORC.addexceptions WORC.classification WORC.classification.AdvancedSampler WORC.classification.construct_classifier WORC.classification.createfixedsplits WORC.classification.crossval WORC.classification.fitandscore WORC.classification.metrics WORC.classification.ObjectSampler WORC.classification.parameter_optimization WORC.classification.regressors WORC.classification.SearchCV WORC.classification.smac WORC.classification.trainclassifier WORC.detectors.detectors WORC.exampledata.create_example_data WORC.exampledata.datadownloader WORC.export.hyper_params_exporter WORC.facade WORC.facade.basicworc WORC.facade.helpers.configbuilder WORC.facade.helpers.exceptions WORC.facade.helpers.processing WORC.facade.simpleworc WORC.featureprocessing WORC.featureprocessing.ComBat WORC.featureprocessing.Decomposition WORC.featureprocessing.FeatureConverter WORC.featureprocessing.ICCThreshold WORC.featureprocessing.Imputer WORC.featureprocessing.OneHotEncoderWrapper WORC.featureprocessing.Preprocessor WORC.featureprocessing.Relief WORC.featureprocessing.Scalers WORC.featureprocessing.SelectGroups WORC.featureprocessing.SelectIndividuals WORC.featureprocessing.StatisticalTestFeatures WORC.featureprocessing.StatisticalTestThreshold WORC.featureprocessing.VarianceThreshold WORC.IOparser.config_io_classifier WORC.IOparser.config_io_combat WORC.IOparser.config_io_PyRadiomics WORC.IOparser.config_preprocessing WORC.IOparser.config_segmentix WORC.IOparser.config_WORC WORC.IOparser.file_io WORC.plotting WORC.plotting.compute_CI WORC.plotting.linstretch WORC.plotting.plot_barchart WORC.plotting.plot_boxplot_features WORC.plotting.plot_boxplot_performance WORC.plotting.plot_errors WORC.plotting.plot_estimator_performance WORC.plotting.plot_hyperparameters WORC.plotting.plot_images WORC.plotting.plot_pvalues_features WORC.plotting.plot_ranked_scores WORC.plotting.plot_ROC WORC.plotting.plotminmaxresponse WORC.processing.classes WORC.processing.ExtractNLargestBlobsn WORC.processing.helpers WORC.processing.label_processing WORC.processing.preprocessing WORC.processing.segmentix WORC.resources.fastr_tests.CalcFeatures_test WORC.resources.fastr_tests.elastix_test WORC.resources.fastr_tests.segmentix_test WORC.resources.fastr_tools WORC.statistics.delong WORC.tests.test_combat WORC.tests.test_helpers WORC.tests.test_iccthreshold WORC.tests.test_plot_errors WORC.tests.test_preprocessing WORC.tests.WORCTutorialSimple_unittest_multiclass WORC.tests.WORCTutorialSimple_unittest_regression WORC.tools.createfixedsplits WORC.tools.Elastix WORC.tools.Evaluate WORC.tools.fingerprinting WORC.tools.Inference WORC.tools.Slicer WORC.tools.Transformix WORC.validators.preflightcheck WORC.WORC

multi_class_auc() (in module WORC.classification.metrics) multi_class_auc_score() (in module WORC.classification.metrics) multi_class_relief() (WORC.featureprocessing.Relief.SelectMulticlassRelief method) multiclass_classification() (WORC.facade.simpleworc.SimpleWORC method)

N

nocrossval() (in module WORC.classification.crossval) NoFeaturesFoundException NoImagesFoundException

NoMasksFoundException normalize_image() (in module WORC.processing.preprocessing) NoSegmentationsFoundException

O

ObjectSampler (class in WORC.classification.ObjectSampler)

OneHotEncoderWrapper (class in WORC.featureprocessing.OneHotEncoderWrapper)

P

pairwise_auc() (in module WORC.classification.metrics) paracheck() (in module WORC.plotting.plot_barchart) PathNotFoundException performance_multilabel() (in module WORC.classification.metrics) performance_singlelabel() (in module WORC.classification.metrics) plot_barchart() (in module WORC.plotting.plot_barchart) plot_bars() (in module WORC.plotting.plot_barchart) plot_boxplot_features() (in module WORC.plotting.plot_boxplot_features) plot_errors() (in module WORC.plotting.plot_errors) plot_estimator_performance() (in module WORC.plotting.plot_estimator_performance) plot_hyperparameters() (in module WORC.plotting.plot_hyperparameters) plot_im_and_overlay() (in module WORC.plotting.plot_images) plot_PRC_CIc() (in module WORC.plotting.plot_ROC) plot_ranked_images() (in module WORC.plotting.plot_ranked_scores) plot_ranked_percentages() (in module WORC.plotting.plot_ranked_scores) plot_ranked_posteriors() (in module WORC.plotting.plot_ranked_scores)

plot_ranked_scores() (in module WORC.plotting.plot_ranked_scores) plot_ROC() (in module WORC.plotting.plot_ROC) plot_ROC_CIc() (in module WORC.plotting.plot_ROC) plot_single_PRC() (in module WORC.plotting.plot_ROC) plot_single_ROC() (in module WORC.plotting.plot_ROC) predict() (WORC.classification.SearchCV.BaseSearchCV method) (WORC.classification.SearchCV.Ensemble method) predict_labels() (WORC.facade.simpleworc.SimpleWORC method) predict_log_proba() (WORC.classification.SearchCV.BaseSearchCV method) (WORC.classification.SearchCV.Ensemble method) predict_proba() (WORC.classification.SearchCV.BaseSearchCV method) (WORC.classification.SearchCV.Ensemble method) preprocess() (in module WORC.processing.preprocessing) (WORC.classification.SearchCV.BaseSearchCV method) Preprocessor (class in WORC.featureprocessing.Preprocessor) process_fit() (WORC.classification.SearchCV.BaseSearchCV method)

R

random_search_parameters() (in module WORC.classification.parameter_optimization) random_split_cross_validation() (in module WORC.classification.crossval) RandomizedSearchCVfastr (class in WORC.classification.SearchCV) RandomizedSearchCVJoblib (class in WORC.classification.SearchCV) refit_and_score() (WORC.classification.SearchCV.BaseSearchCV method) regression() (WORC.facade.simpleworc.SimpleWORC method) replacenan() (in module WORC.classification.fitandscore)

resample_image() (in module WORC.processing.helpers) rms_score() (in module WORC.classification.SearchCV) RobustStandardScaler (class in WORC.featureprocessing.Scalers) run_inference() (WORC.facade.simpleworc.SimpleWORC method) rvs() (WORC.classification.AdvancedSampler.boolean_uniform method) (WORC.classification.AdvancedSampler.discrete_uniform method) (WORC.classification.AdvancedSampler.exp_uniform method) (WORC.classification.AdvancedSampler.log_uniform method)

S

SamplesWarning (class in WORC.validators.preflightcheck) sar_score() (in module WORC.classification.SearchCV) save_config() (WORC.WORC.WORC method) score() (WORC.classification.SearchCV.BaseSearchCV method) segmentations_from_this_directory() (WORC.facade.simpleworc.SimpleWORC method) segmentix() (in module WORC.processing.segmentix) SelectGroups (class in WORC.featureprocessing.SelectGroups) SelectIndividuals (class in WORC.featureprocessing.SelectIndividuals) SelectMulticlassRelief (class in WORC.featureprocessing.Relief) selfeat_variance() (in module WORC.featureprocessing.VarianceThreshold) semantics_from_this_file() (WORC.facade.simpleworc.SimpleWORC method) set() (WORC.tools.Evaluate.Evaluate method) (WORC.tools.Slicer.Slicer method) (WORC.WORC.WORC method) set_fixed_splits() (WORC.facade.simpleworc.SimpleWORC method) set_image_types() (WORC.facade.simpleworc.SimpleWORC method) set_multicore_execution() (WORC.facade.simpleworc.SimpleWORC method) set_registration_parameterfile() (WORC.facade.simpleworc.SimpleWORC method)

set_tmpdir() (WORC.facade.simpleworc.SimpleWORC method) SimpleValidator (class in WORC.validators.preflightcheck) SimpleWORC (class in WORC.facade.simpleworc) single_class_relief() (WORC.featureprocessing.Relief.SelectMulticlassRelief method) sink_data() (in module WORC.resources.fastr_tests.CalcFeatures_test) (in module WORC.resources.fastr_tests.elastix_test) (in module WORC.resources.fastr_tests.segmentix_test) Slicer (class in WORC.tools.Slicer) slicer() (in module WORC.plotting.plot_images) SnelliusClusterDetector (class in WORC.detectors.detectors) source_data() (in module WORC.resources.fastr_tests.CalcFeatures_test) (in module WORC.resources.fastr_tests.elastix_test) (in module WORC.resources.fastr_tests.segmentix_test) StatisticalTestFeatures() (in module WORC.featureprocessing.StatisticalTestFeatures) StatisticalTestThreshold (class in WORC.featureprocessing.StatisticalTestThreshold) survival() (WORC.facade.simpleworc.SimpleWORC method) switch (class in WORC.processing.classes) Synthetictest() (in module WORC.featureprocessing.ComBat)

T

test() (in module WORC.featureprocessing.OneHotEncoderWrapper) (in module WORC.featureprocessing.Scalers) (in module WORC.plotting.plot_boxplot_performance) (in module WORC.tools.createfixedsplits) test_combat() (in module WORC.tests.test_combat) test_combat_fastr() (in module WORC.tests.test_combat) test_iccthreshold() (in module WORC.tests.test_iccthreshold) test_plot_errors() (in module WORC.tests.test_plot_errors) test_preprocessing() (in module WORC.tests.test_preprocessing) test_RS_Ensemble() (in module WORC.classification.crossval) Tools (class in WORC.WORC) trainclassifier() (in module WORC.classification.trainclassifier) transform() (WORC.classification.ObjectSampler.ObjectSampler method) (WORC.classification.SearchCV.BaseSearchCV method) (WORC.classification.SearchCV.Ensemble method) (WORC.featureprocessing.ICCThreshold.ICCThreshold method) (WORC.featureprocessing.Imputer.Imputer method) (WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper method) (WORC.featureprocessing.Preprocessor.Preprocessor method) (WORC.featureprocessing.Relief.SelectMulticlassRelief method) (WORC.featureprocessing.Scalers.WORCScaler method) (WORC.featureprocessing.SelectGroups.SelectGroups method) (WORC.featureprocessing.SelectIndividuals.SelectIndividuals method) (WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method) (WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean method)

Transformix (class in WORC.tools.Transformix) transpose_image() (in module WORC.processing.helpers)

V

ValidatorsFactory (class in WORC.validators.preflightcheck)

VarianceThresholdMean (class in WORC.featureprocessing.VarianceThreshold)

W

WORC (class in WORC.WORC) WORC.__init__ module WORC.addexceptions module WORC.classification module WORC.classification.AdvancedSampler module WORC.classification.construct_classifier module WORC.classification.createfixedsplits module WORC.classification.crossval module WORC.classification.fitandscore module WORC.classification.metrics module WORC.classification.ObjectSampler module WORC.classification.parameter_optimization module WORC.classification.regressors module WORC.classification.SearchCV module WORC.classification.smac module WORC.classification.trainclassifier module WORC.detectors.detectors module WORC.exampledata.create_example_data module WORC.exampledata.datadownloader module WORC.export.hyper_params_exporter module WORC.facade module WORC.facade.basicworc module WORC.facade.helpers.configbuilder module WORC.facade.helpers.exceptions module WORC.facade.helpers.processing module WORC.facade.simpleworc module WORC.featureprocessing module WORC.featureprocessing.ComBat module WORC.featureprocessing.Decomposition module WORC.featureprocessing.FeatureConverter module WORC.featureprocessing.ICCThreshold module WORC.featureprocessing.Imputer module WORC.featureprocessing.OneHotEncoderWrapper module WORC.featureprocessing.Preprocessor module WORC.featureprocessing.Relief module WORC.featureprocessing.Scalers module WORC.featureprocessing.SelectGroups module WORC.featureprocessing.SelectIndividuals module WORC.featureprocessing.StatisticalTestFeatures module WORC.featureprocessing.StatisticalTestThreshold module WORC.featureprocessing.VarianceThreshold module WORC.IOparser.config_io_classifier module WORC.IOparser.config_io_combat module WORC.IOparser.config_io_PyRadiomics module WORC.IOparser.config_preprocessing module WORC.IOparser.config_segmentix module WORC.IOparser.config_WORC module

WORC.IOparser.file_io module WORC.plotting module WORC.plotting.compute_CI module WORC.plotting.linstretch module WORC.plotting.plot_barchart module WORC.plotting.plot_boxplot_features module WORC.plotting.plot_boxplot_performance module WORC.plotting.plot_errors module WORC.plotting.plot_estimator_performance module WORC.plotting.plot_hyperparameters module WORC.plotting.plot_images module WORC.plotting.plot_pvalues_features module WORC.plotting.plot_ranked_scores module WORC.plotting.plot_ROC module WORC.plotting.plotminmaxresponse module WORC.processing.classes module WORC.processing.ExtractNLargestBlobsn module WORC.processing.helpers module WORC.processing.label_processing module WORC.processing.preprocessing module WORC.processing.segmentix module WORC.resources.fastr_tests.CalcFeatures_test module WORC.resources.fastr_tests.elastix_test module WORC.resources.fastr_tests.segmentix_test module WORC.resources.fastr_tools module WORC.statistics.delong module WORC.tests.test_combat module WORC.tests.test_helpers module WORC.tests.test_iccthreshold module WORC.tests.test_plot_errors module WORC.tests.test_preprocessing module WORC.tests.WORCTutorialSimple_unittest_multiclass module WORC.tests.WORCTutorialSimple_unittest_regression module WORC.tools.createfixedsplits module WORC.tools.Elastix module WORC.tools.Evaluate module WORC.tools.fingerprinting module WORC.tools.Inference module WORC.tools.Slicer module WORC.tools.Transformix module WORC.validators.preflightcheck module WORC.WORC module WORCAssertionError WORCDirectoryDetector (class in WORC.detectors.detectors) WORCError WORCIndexError WORCIOError WORCKeyError WORCNotImplementedError WORCScaler (class in WORC.featureprocessing.Scalers) WORCTypeError WORCValueError